- a -

• alloc_2d() : utils.h
• alloc_4d() : utils.h

- c -

• calculate_period_length() : brainsetup.h
• contains_flag() : brainsetup.h
• create_and_run_simulation_thread() : utils.h

- d -

• d_kernel_4neighbors() : kernels.h
• d_kernel_function_factory() : kernels.h
• destroy_thread_barrier() : utils.h

- e -

• execute_partial_simulation() : brainsimulation.h
• execute_partial_tick() : brainsimulation.h
• execute_simulation_multithreaded() : brainsimulation.h
• execute_simulation_singlethreaded() : brainsimulation.h
• extract_observationnodes() : brainsimulation.h

- g -

• generate_input_frequencies() : brainsetup.h
• generate_input_frequencies_default() : brainsetup.h
• generate_input_frequencies_from_bitmap() : brainsetup.h
• generate_input_frequencies_from_sh() : brainsetup.h
• generate_input_frequencies_from_sh_bitmap() : brainsetup.h
• generate_sin_frequency() : brainsetup.h
• generate_sin_time_series() : brainsetup.h
• get_daytime() : utils.h
• get_field() : utils.h

- i -

• id_kernel_4neighbors() : kernels.h
• id_kernel_function_factory() : kernels.h
• init_executioncontext() : utils.h
• init_nodegrid_default() : brainsetup.h
• init_observation_timeseries() : brainsetup.h
• init_observation_timeseries_default() : brainsetup.h
• init_observation_timeseries_from_sh() : brainsetup.h
• init_partial_simulation_context() : utils.h
• init_start_time_state() : brainsetup.h
• init_start_time_state_from_sh() : brainsetup.h
• init_thread_barrier() : utils.h
• init_zeros_2d() : utils.h

- j -

• join_and_close_simulation_threads() : utils.h

- o -

• output_to_csv() : utils.h

- p -

• parse_file() : utils.h
• parse_int_arg() : brainsetup.h
• process() : nodefunc.h
• process_global_inputs() : brainsimulation.h
• process_input() : brainsimulation.h
• process_partial_inputs() : brainsimulation.h

- r -

• read_bitmap_contents() : brainsetup.h
• read_input_behavior() : brainsetup.h

- s -

• simulate() : brainsimulation.h
• system_processor_online_count() : utils.h

- w -

• wait_at_barrier() : utils.h