brainsimulation.h

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#ifndef BRAINSIMULATION_H
#define BRAINSIMULATION_H

#include "definitions.h"
#include "utils.h"

//function declarations

unsigned int simulate(double tick_ms,
                      int num_ticks,
                      int number_nodes_x,
                      int number_nodes_y,
                      nodeval_t **nodes,
                      int num_obervationnodes,
                      nodetimeseries_t *oberservationnodes,
                      int number_inputs,
                      nodeinputseries_t *inputs);

unsigned int execute_simulation_multithreaded(executioncontext_t *executioncontext,
                                              int num_ticks, double tick_ms, int number_nodes_x, int number_nodes_y,
                                              int num_obervationnodes, nodetimeseries_t *observationnodes,
                                              nodeval_t **old_state,
                                              nodeval_t **new_state, nodeval_t **slopes, nodeval_t ****kernels,
                                              kernelfunc_t d_ptr, kernelfunc_t id_ptr,
                                              int number_global_inputs, nodeinputseries_t *global_inputs);

unsigned int execute_simulation_singlethreaded(executioncontext_t *executioncontext,
                                               int num_ticks, double tick_ms, int number_nodes_x, int number_nodes_y,
                                               int num_obervationnodes, nodetimeseries_t *observationnodes,
                                               nodeval_t **old_state,
                                               nodeval_t **new_state, nodeval_t **slopes, nodeval_t ****kernels,
                                               kernelfunc_t d_ptr, kernelfunc_t id_ptr,
                                               int number_global_inputs, nodeinputseries_t *global_inputs);

unsigned int execute_partial_simulation(partialsimulationcontext_t *context);

unsigned int execute_partial_tick(partialsimulationcontext_t *context);

void extract_observationnodes(int ticknumber, int num_obervationnodes, nodetimeseries_t *observationnodes,
                              nodeval_t **state);

void process_global_inputs(int tick_number, double tick_ms,
                           nodeval_t **state, int number_global_inputs, nodeinputseries_t *global_inputs);

void process_partial_inputs(int tick_number, double tick_ms,
                            nodeval_t **state, int number_partial_inputs, nodeinputseries_t **partial_inputs);

void process_input(int tick_number, double tick_ms,
                   nodeval_t **state, nodeinputseries_t *input);

#endif