brainsetup.h

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#ifndef BRAINSETUP_H
#define BRAINSETUP_H

#include "definitions.h"

#define FLAG_TICKS "--ticks"

#define FLAG_X_OBSERVATIONNODES "--xobs"

#define FLAG_Y_OBSERVATIONNODES "--yobs"

#define FLAG_X_NODES "-x"

#define FLAG_Y_NODES "-y"

#define FLAG_START_LEVELS "--startlevels"

#define FLAG_START_NODES_X "--startx"

#define FLAG_START_NODES_Y "--starty"

#define FLAG_FREQUENCIES "--freqs"

#define FLAG_FREQ_NODES_X "--freqx"

#define FLAG_FREQ_NODES_Y "--freqy"

#define FLAG_FREQ_BITMAPS "--freqbitmaps"

#define FLAG_MIN_BITMAP_FREQ "--minbitmapfreq"

#define FLAG_MAX_BITMAP_FREQ "--maxbitmapfreq"

#define FLAG_BITMAP_DURATION "--bitmapduration"


unsigned int contains_flag(const int argc, const char * argv[], const char * flag);

int parse_int_arg(const int argc, const char * argv[], const char * flag);

nodetimeseries_t *init_observation_timeseries_from_sh(const int argc, const char *argv[],
    int * num_observationnodes);

nodetimeseries_t *init_observation_timeseries_default(int * num_observationnodes, int num_ticks);

nodetimeseries_t *init_observation_timeseries(const int num_oberservationnodes,
                                              const int *x_indices, const int *y_indices,
                                              const int num_timeseries_elements);

void init_start_time_state_from_sh(const int argc, const char * argv[], 
    const int number_nodes_x, const int number_nodes_y, nodeval_t **nodes);

nodeval_t **init_nodegrid_default(int *number_nodes_x, int *number_nodes_y);

void init_start_time_state(const int number_nodes_x, const int number_nodes_y, nodeval_t **nodes,
                           const int num_start_levels, const nodeval_t *start_levels,
                           const int *start_nodes_x, const int *start_nodes_y);

nodeinputseries_t *read_input_behavior(const int number_of_inputnodes, const int *x_indices, const int *y_indices,
                                       const char **inputnodefilenames, const int *number_of_elements);

double *generate_sin_time_series(int hz, const double tick_ms, int number_of_samples);

double *generate_sin_frequency(int hz, const double tick_ms);

int calculate_period_length(int hz, const double tick_ms);

nodeinputseries_t *generate_input_frequencies_from_sh(const int argc, const char * argv[], int *num_inputnodes, const double tick_ms);

nodeinputseries_t *generate_input_frequencies_default(int *num_inputnodes, const double tick_ms);

nodeinputseries_t *generate_input_frequencies(const int number_of_inputnodes, const int *x_indices,
                                              const int *y_indices, const int *frequencies, const double tick_ms);


unsigned int *read_bitmap_contents(const char *bitmap_path, unsigned int *bitmap_size_x, unsigned int *bitmap_size_y);

nodeinputseries_t *generate_input_frequencies_from_bitmap(const char * filenames[], const unsigned int num_filenames,
    const int min_freq, const int max_freq, const int bitmap_duration_ticks, int *num_inputnodes, const double tick_ms);

nodeinputseries_t *generate_input_frequencies_from_sh_bitmap(const int argc, const char * argv[], int *num_inputnodes, const double tick_ms);

#endif